YAKUNET: a web interface to YAKUSA

Fast scan of protein structure databases

YAKUSA overview and help

YAKUSA sources, binaries and database for using at "home"

Please inform if you find any bug ..

Enter PDB Code (4 letters):

   (if several chains in structure, next page will prompt you to choose one)

Or Choose the file containing your coordinates in PDB format(*)


Or Paste or edit your coordinates in PDB format(*):


Choose your database:

 Databases description and help
  Now  ...    or...    

You can customize your yakusa query, if you are an experienced user, by changing the following parameters:


Choose classification mode of the proteins:


Number of kept structures :


Value of seed length :


Delta value:


Delta max value :


Minimal length of SHSP :


Alpha helice hidden :

  Minimal length of hidden helix :
  Maximal angle in a helix:
  Minimal angle in helix:


(*)The coordinates MUST be provided in PDB format (Note: last fields in ATOM records (i.e. occupancy, temperature factor, segID, element and charge) can be omitted)
The radio buttons indicate which entry will be processed (PDB code / filename / pasted data)
Important :Each line in the PDB file must end with a carriage return

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